This scientific programme is still subject to small changes.
| Day 1, Tuesday December 5, 2017 | |
| 08:30 | Registration and poster hang-up |
| 09:00 | Welcome and Introduction |
| 09:10 | Keynote talk |
| FAIRy stories: tales, musings and morals. Carole Goble, University of Manchester, United Kingdom |
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| 09:50 | Oral communications |
| Towards a FAIR Sharing of Scientific Experiments: Improving Discoverability and Reusability of Dielectric Measurements of Biological Tissues Md. Rezaul Karim, Matthias Heinrichs, Lars C. Gleim, Michael Cochez, Emily Porter, Alessandra La Gioia, Saqib Salahuddin, Stefan Decker, Martin O’Halloran and Oya Deniz Beyan Embracing Semantic Technology for Better Metadata Authoring in Biomedicine Attila L. Egyedi, Martin O’Connor, Marcos Martínez-Romero, Debra Willrett, Josef Hardi, John Graybeal and Mark Musen |
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| 10:30 | Coffee break |
| 11:00 | Flash poster presentations |
| Revealing disease similarities by text mining Alberto Calderone, Luana Licata, Elisa Micarelli, Livia Perfetto and Gianni Cesareni Optimizing Semantic Data Transformation using High Performance Computing Techniques José Antonio Bernabé Díaz, María Del Carmen Legaz-García, José Manuel García Carrasco and Jesualdo Tomás Fernández-Breis On Improving the Phenotype Acquisition Process using Semantic Web Technology Ernesto Jimenez-Ruiz, Dag Hovland, Laura Slaughter, Tony Handstad and Arild Waaler BioGraph: Linking Biological Bases Across Organisms Luana Loubet Borges and André Santanchè Assessment of FAIRness of open data sources in life sciences Filip Pattyn, Bérénice Wulbrecht, Kenny Knecht and Hans Constandt Fuzzy Knowledge Base for Medical Training Ray Dueñas Jiménez, André Santanchè, Roger Vieira Horvat, Marcelo Schweller, Tiago de Araujo Guerra Grangeia and Marco Antonio Carvalho-Filho Implementing ELSI 2.0 for international collaborative research: improving access to clinical and genetics data by connecting ELSI policies, FAIR data software solutions, and ELIXIR-AAI Sabina Gainotti, Carlo Petrini, Deborah Mascalzoni, Giovanna Floridia, Luciana Riva, Mark Wilkinson and Marco Roos The FAIRification of data and the potential of FAIR resources demonstrated, in practice, at the Rome Bring Your Own Data workshop Claudio Carta, Marco Roos, Annika Jacobsen, Rajaram Kaliyaperumal, Mark Thompson, Mark Wilkinson, Ronald Cornet, Andra Waagmeester, David van Enckevort, Mascha Jansen, Luana Licata, Allegra Via and Domenica Taruscio LOD Surfer API: Web API for LOD Surfing using Class-Class Relationships in Life Sciences Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya and Norio Kobayashi |
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| 12:00 | Poster session |
| 13:00 | Lunch break |
| 14:00 | Oral communications |
| Achieving Pro-Active Guidance of Patients through ADL using Knowledge-Driven Activity Recognition and Complex Semantic Workflows William Van Woensel, Patrice Roy and Syed Sibte Raza Abidi BioKB – Text mining and semantic technologies for the biomedical content discovery Maria Biryukov, Valentin Gruès and Venkata Satagopam Blending FHIR RDF and OWL Harold Solbrig, Eric Prud’Hommeaux and Guoqian Jiang Clustering Cancer Drugs According to their Mechanisms of Action Syed Abdullah Ali and Riza Theresa Batista-Navarro |
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| 15:20 | Guest talk |
| 10 years of hackathons: a reflection (provisional title) Toshiaki Katayama, Human Genome Center (HGC), University of Tokyo, Japan |
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| 15:40 | Panel discussion |
| Introduction and presentation of themes | |
| 16:20 | Coffee break |
| 16:50 | Day closure & begin of social activity Programme will be communicated at the venue. |
| 21:00 | Social dinner at the La Limonaia di Villa Torlonia, Via Lazzaro Spallanzani, 1/A, Roma. See map. |
| Day 2, Wednesday December 6, 2017 | |
| 09:00 | Registration and poster hang-up |
| 09:20 | Keynote talk |
| Learning with Knowledge Graphs: From Medical Decision Support to Human Perception and Memory Volker Tresp, Ludwig Maximilan University of Munich and Siemens, Germany |
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| 10:00 | Oral communications |
| Drug Repurposing Using a Semantic Knowledge Graph Tareq B. Malas, Roman Kudrin, Sergei Starikov, Dorien Peters, Marco Roos, Peter A.C. ʼt Hoen and Kristina Hettne |
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| 10:20 | Coffee break |
| 10:50 | Flash poster presentations |
| Metadata-driven interdisciplinary research projects using RIKEN MetaDatabase Norio Kobayashi, Satoshi Kume and Hiroshi Masuya Bioschemas: schema.org for the Life Sciences Leyla Jael García Castro, Olga X. Giraldo, Alexander Garcia, Michel Dumontier and Bioschemas Community The UniProt SPARQL Endpoint: 32 Billion Triples in Production Jerven Bolleman, Sebastien Gehant, Thierry Lombardot, Alan Bridge, Ioannis Xenarios and Nicole Redaschi Document-centric workflow: a framework for ontology development Aisha Blfgeh and Phillip Lord Visualizing metabolomics data in directed biological networks Ryan Miller, Denise Slenter, Martina Kutmon, Jonathan Melius, Georg Summer, Chris Evelo and Egon Willighagen Shō-coin: A knowledge-based economy for Life Sciences Alexander Garcia, Erick Antezana, Jael García, Olga X. Giraldo, Pjotr Prins and Rutger Vos Towards an Ontology for Sharing Information on Pharmacovigilance Signals Pantelis Natsiavas and Vassilis Koutkias Construction of Knowledge-base for Clinical Interpretation of Genomic Variants Mayumi Kamada, Toshiaki Katayama, Shuichi Kawashima, Ryosuke Kojima, Masahiko Nakatsui and Yasushi Okuno DISQOVER: Through the large data landscape of Life Sciences Berenice Wulbrecht, Filip Pattyn, Kenny Knecht and Hans Constandt SPARQL-Proxy: a generic proxy server for SPARQL endpoint Shuichi Kawashima and Toshiaki Katayama SPARQList: Markdown-based highly configurable REST API hosting server for SPARQL Toshiaki Katayama and Shuichi Kawashima Message Exchange between Independent Implementations of Servers in the Nexus-PORTAL-DOORS System Adam Craig, Seung-Ho Bae and Carl Taswell Overview of a suite of tools and training material for implementing FAIR data principles Mark Thompson, Luiz Olavo Bonino Da Silva Santos, Kees Burger, Rajaram Kaliyaperumal, Erik Schultes, Annika Jacobsen, Claudio Carta, Richard Finkers, David van Enckevort, Mascha Jansen, Barend Mons and Marco Roos |
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| 11:50 | Poster session |
| 12:50 | Lunch break |
| 13:50 | Panel discussion |
| Discussion on identified themes and conclusions | |
| 14:50 | Keynote talk |
| The Human Phenotype Ontology: A Semantic Framework for Phenotype Driven Translational Research and Genomic Diagnostics. Peter Robinson, The Jackson Laboratory for Precision Medicine, Farmington, USA |
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| 15:30 | Coffee break |
| 16:00 | Oral communications |
| Approach to an ontology-based mobile intervention for patients with hypertension Tyler Wheeler and Samina Abidi Leveraging logical rules for efficacious representation of large orthology datasets Tarcisio M. Farias, Hirokazu Chiba and Jesualdo T. Fernández-Breis Experiments to create ontology-based disease models for diabetic retinopathy from different biomedical resources Mercedes Arguello Casteleiro, Catalina Martínez Costa, Julio Des-Diz, Maria Jesus Fernandez-Prieto, Chris Wroe, Diego Maseda-Fernandez, George Demetriou, Goran Nenadic, John Keane, Stefan Schulz and Robert Stevens Machine Learning based Drug Indication Prediction using Linked Open Data Remzi Çelebİ, Özgün Erten and Michel Dumontier |
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| 17:20 | Short communications |
| Enriching the Human Phenotype Ontology with inferred axioms from textual descriptions Shahad Kudama, Rafael Berlanga and Ernesto Jiménez-Ruiz Linking African Traditional Medicine Knowledge A. Gossa Lo, Victor de Boer and Stefan Schlobach A Semantic Web Framework for Behavioral User Modeling and Action Planning for Personalized Behavior Modification William Van Woensel, Wasif Baig, Syed Sibte Raza Abidi and Samina Abidi Developing A Semantic Web-based Framework for Executing the Clinical Quality Language Using FHIR Guoqian Jiang, Eric Prud’Hommeaux and Harold Solbrig |
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| 18:00 | Day closure & farewell |