Day 2 – January 12th 2022
Welcome and introduction
https://slideslive.com/38975633
Keynote
Prof Karin Verspoor – Chair: Marco Roos
https://slideslive.com/38975634
Presentations: Semantic Web and FAIR Health
Chair Rianne Fijten – Co-chair Núria Queralt Rosinach
Sabine Oesterle, Vasundra Touré and Katrin Crameri, The SPHN Ecosystem towards FAIR Data
https://slideslive.com/38975639
Ruduan Plug, Yan Liang, Mariam Basajja, Aliya Aktau, Putu Jati, Samson Amare, Getu Taye, Mouhamad Mpezamihigo, Francisca Oladipo and Mirjam van Reisen: FAIR and GDPR Compliant Population Health Data Generation, Processing and Analytics
https://slideslive.com/38975640
Deepak Sharma, Eric Prud’hommeaux, David Booth, Kevin Peterson, Daniel Stone, Harold Solbrig, Guohui Xiao, Emily Pfaff and Guoqian Jiang, Implementing a New FHIR RDF Specification for Semantic Clinical Data Using a JSON-LD-based Approach
https://slideslive.com/38975641
Mercedes Arguello-Casteleiro, Chloe Henson, Nava Maroto, Saihong Li, Julio Des-Diz, Maria Jesus Fernandez-Prieto, Simon Peters, Timothy Furmston, Carlos Sevillano-Torrado, Diego Maseda-Fernandez, Manoj Kulshrestha, John Keane, Robert Stevens and Chris Wroe, MetaMap versus BERT models with explainable active learning: ontology-based experiments with prior knowledge for COVID-19
https://slideslive.com/38975642
Online poster pitches for Posters in Group 1
Chair Andrea Splendiani – Co-chair Andra Waagmeester
https://slideslive.com/38975643
Gathertown Poster Session
Chair Bruna Dos Santos Viera – Co-chair Martijn Kersloot
Keynote
Dr. Martina Summer-Kutmon, Chair Andra Waagmeester – Co-chair Chris Baker.
https://slideslive.com/38975644
Invited Talk
FAIR Agronomy where are we, The KnetMiner Use Case, Marco Brandizi and Keywan Hassani-Pak, Introduced by Chris Baker.
https://slideslive.com/38975645
Presentation session 2 – Knowledge Graphs
Chair: M. Scott Marshall – Co-chair Shuxin Zhang.
Alasdair Gray, Petros Papadopoulos, Ivan Mičetić and András Hatos, Creating and Exploiting the Intrinsically Disordered Protein Knowledge Graph (IDP-KG)
https://slideslive.com/38975650
Helena Balabin, Charles Hoyt, Benjamin M. Gyori, John Bachman, Alpha Tom Kodamullil, Martin Hofmann-Apitius and Daniel Domingo-Fernández, ProtSTonKGs: A Sophisticated Transformer Trained on Protein Sequences, Text, and Knowledge Graphs
https://slideslive.com/38975651
Vincenzo Daponte, Catherine Hayes, Julien Mariethoz and Frederique Lisacek, Glycan semantic model applications in substructure search
https://slideslive.com/38975656
Julie Loesch, Louis Meeckers, Ilse van Lier, Alie de Boer, Michel Dumontier and Remzi Celebi, Automated Identification of Food Substitutions Using Knowledge Graph Embeddings
https://slideslive.com/38975657
Panel session – Agri-semantics
Chair Chris Baker – Co-chair Scott Marshall.
https://slideslive.com/38975658
Day 3 – January 13th 2022
Presentations 3 Ontologies, Semantic Annotation and FAIR Standards
Chair Leyla Jael Garcia Castro – Co-chair Joeri van der Velde.
Chang Sun, Vincent Emonet and Michel Dumontier, A comprehensive comparison of automated FAIRness Evaluation Tools
https://slideslive.com/38975659
Fuqi Xu, Nick Juty, Carole Goble, Simon Jupp, Helen Parkinson and Mélanie Courtot, Features of a FAIR vocabulary
https://slideslive.com/38975660
Olga Giraldo, Miguel Ruano, Robin A. Richardson, Remzi Celebi, Michel Dumontier and Tobias Kuhn, Nanotate: Semantically annotating experimental protocols with nanopublications
https://slideslive.com/38975661
Frances Gillis-Webber and C. Maria Keet, A Survey of Multilingual OWL Ontologies in BioPortal
https://slideslive.com/38975663
Keynote
Prof Mirjam van Reisen, Chair Katy Wolstencroft, Co-chair Marco Roos.
https://slideslive.com/38975664
Online poster pitches group 2
Chair Andrea Splendiani – Co-chair Rutger Vos.
https://slideslive.com/38975665
Gathertown Poster Session
Chair Bruna dos Santos Vieira – Co-chair Martijn Kersloot.
Presentations session 4
Chair Rutger Vos – Co-chair Clémence le Cornec.
Ali Syed, Senay Kafkas, Maxat Kulmanov and Robert Hoehndorf, Using SPARQL to unify queries over data, ontologies, and machine learning models in the PhenomeBrowser knowledgebase
https://slideslive.com/38975666
Rajaram Kaliyaperumal, Gurnoor Singh, Núria Queralt-Rosinach, Jumamurat Bayjanov, Peter-Bram T Hoen and Marco Roos, Phenopackets for the Semantic Web
https://slideslive.com/38975667
César Bernabé, Núria Queralt-Rosinach, Vitor Souza, Luiz Santos, Annika Jacobsen, Barend Mons and Marco Roos, The use of Foundational Ontologies in Bioinformatics
https://slideslive.com/38975668
Keynote 4
Prof Amit Sheth, Chair: Chris Baker – Co-chair Andrea Splendiani.
https://slideslive.com/38975669
Closing remarks and next SWAT4HCLS
Andrea Splendiani, Marco Roos, Rutger Vos, Scott Marshall, Katy Wolstencroft
https://slideslive.com/38975670