An interactive version of the programme is available via oxford abstracts. This includes the tutorials on Mon 24 Feb, main conference on Tue 25 Feb to Wed 26 Feb, and Biohackathon on Thu 27 Feb.
Programme
| DAY 1 – Monday 24th February – Tutorials (detailed tutorials program) | ||
| 09:00-18:00 | Hackathon area | |
| 09:00-13:00 | A hands-on exploration of SPHN Semantic Interoperability Framework for FAIR knowledge graphs | Deepak Unni, Vasundra Touré, Harald Witte, Jan Armida, Philip Krauss, Thomas Geiger, Sabine Österle |
| 09:00-13:00 | Semi-automated Transformation and Mapping to RDF Graphs | Remzi Çelebi, Ensar Emir Erol, Ömer Durukan Kılıç and Shervin Mehryar |
| 09:00-13:00 | MetaData, the data you always wanted | Andra Waagmeester, Jerven Bolleman |
| 13:00-14:00 | Lunch | |
(CANCELLED BY U.S. president) | Bolton | |
| 14:00-18:00 | How to efficiently apply LLMs to generate SPARQL queries over life science databases? | Vincent Emonet, Ana Claudia Sima and Tarcisio Mendes de Farias |
| 14:00-18:00 | FAIR Provenance for Health Data Spaces | Matthias Löbe, Kerstin Gierend, Martin Golebiewski, Frank Meineke, Rudolf Wittner and Judith Wodke |
| DAY 2 Tuesday 25th February – Conference (list of accepted contributions and detail on keynotes) | ||
| 09:00-18:00 | Hackathon area | Hackathon area |
| 09:00-18:00 | Poster area | |
| 08:00-9:00 | Registration | |
| 09:00-09:50 | Keynote: Knowledge graphs for FAIR principles and legal compliance in health care and life sciences data | Prof. Anna Fensel |
| 09:50-10:15 | Biomedical Ontology Matching using Relational Graph Neural Networks and RDFs Meta-Path Rules | Shervin Mehryar, Julie Loesch, Emma Pinckers, Alan van den Akker, Yannick Damoiseaux, Athanasios Stavrinopoulos, Nikola Prianikov, Remzi Celebi |
| 10:15-10:40 | Quality issues on mappings between ICD10 and SNOMED CT | Emiliano Reynares, Andrea Splendiani |
| 10:40-10:55 | A Resolution-Alignment-Completeness System for Diagnosis Code Imputation in Clinical Knowledge Graphs | Shervin Mehryar, Ozge Erten, Tsvetan Asamov, Svetla Boytcheva, Remzi Celebi |
| 10:55-11:25 | Coffee break | |
| 11:25-11:50 | Semantic Beacons: a framework to support federated querying over genomic variants and public Knowledge Graphs | Alexandrina Bodrug-Schepers, Hugo Chabane, Gabriela Montoya, Patricia Serrano-Alvarado, Richard Redon, Alban Gaignard |
| 11:50-12:05 | From Clinical Data to Discovery: integration of Beacon v2 with OMOP-CDM | Sergi Aguiló, Alberto Labarga, Miguel Ángel Mayer, Juan Manuel Ramírez-Anguita, Oriol López-Doriga Sagales, Aurora Moreno-Racero, Liina Nagirnaja, Dmitry Repchevski, Salvador Capella-Gutierrez, Jordi Rambla |
| 12:05-12:30 | Judgment Day: Symbolic AI versus Neuro-Symbolic AI in a Usability Study with UK Junior Doctors | Mercedes Arguello Casteleiro, Chloe Henson, Manoj Kulshrestha, Diego Maseda Fernandez, Julio Des Diz, Carlos Sevillano Torrado, Nava Maroto, Maria Jesus Fernandez Prieto, Tim Furmston, Chris Wroe, John Keane, Robert Stevens |
| 12:30-12:45 | LLM-Based Ontology Mapping for Privacy-Preserving Healthcare Data Management | Maria Papoutsoglou, Apostolos Mavridis, Stergios Tegos, Christos Anastasiou, Georgios Meditskos |
| 12:45-13:00 | Utilization of Semantic Technologies to Achieve Interoperability Between Dental Data and EHRs: A Proof of Concept | Hugo Lebredo, Ruben del Rey Álvarez, Jose Emilio Labra Gayo |
| 13:00-14:00 | Lunch | |
| 14:00-14:45 | Poster / Demo Flash | |
| 14:45-16:00 | Poster / Demo Session | |
| 16:00-16:25 | The Pistoia Alliance Pharma General Ontology: Experience using LinkML in Pharma | Joshua Valdez, Philippe Rocca-Serra, Markus Hartmann, Darko Hric, Asiyah Yu Lin, Birgit Meldal, Peter McQuilton, Riccardo Mariani, Martin Romacker, Giovanni Nisato, Ben Gardner |
| 16:25-16:50 | Treating Query Graphs As Connecting Trees \ Mapping SPARQL Queries to FHIR API | Eric Prud’hommeaux, Jerven Bolleman, Claude Nanjo |
| 16:50-17:05 | Comparison of Cardiovascular Disease Trajectories: AFrance Vs Nordic countries’ perspective under the HealthData@EU EHDS project | Gayo Diallo |
| 17:05-17:35 | Sponsored talk: Decisions, decisions, decisions An abridged history of human decision making & evolution; and what does the future hold? | Russell Smart, Enterprise Sales Manager at metaphacts |
| 17:35-18:30 | Towards Next Generation Health Data Spaces | Miguel Pedrera |
| 18:30 | Drinks, Tour 19:15, Dinner 20:00 | Lluís Domènech i Montaner room |
| DAY 3 – Wednesday 26th February – Conference | ||
| 09:00-18:00 | Hackathon area | |
| 09:00-18:00 | Poster area | |
| 09:25-10:15 | FAIR in Action: Transforming Cheminformatics Through Linked Data, Standards, and International Collaboration | Prof. Jiri Vondrasek |
| 10:15-10:40 | Imaging and curation of human TB lung tissue with linked data | Gordon Wells, Kapongo Lumamba, Keviershen Nargan, Delon Naicker, Ashendree Govender, Rajhmun Madansein, Kameel Maharaj, Mpumelelo Msimang, Paul Benson, Threnesan Naidoo, Zoi Katsirea, Tannia Gracia, Fani Memi, Josh Moore, Andra Waagmeester, Adrie Steyn |
| 10:40-10:55 | Leveraging Zarr to handle RDF data | Ángel Iglesias Préstamo, Diego Martín Fernández, Jose Emilio Labra Gayo, Josh Moore |
| 10:55-11:25 | Coffee break | |
| 11:25-11:50 | HERO-Genomics: An Ontology for Integration and Access of Multicenter Genomic Data | Mirco Cazzaro, Ivo G. Gut, Laura Menotti, Manuel Rueda, Gianmaria Silvello |
| 11:50-12:15 | FAIR Linked Data Framework for Glioblastoma Research. | Zoi Katsirea, Samira Osterop, Valérie Dutoit, Tong Li, Etienne Doumazane, Stephane Pages, Omer Ali Bayraktar, Josh Moore, Andra Waagmeester, Tannia Gracia |
| 12:15-12:30 | Merging and Validating Health Ontologies: A Framework for Ontological Integration and Evaluation | Safaa Menad, Saïd Abdeddaïm, Fatima Lina Soualmia |
| 12:30-12:45 | Harnessing Semantic Technologies and Large Language Models for Trusted Knowledge Identification in Healthcare and Pharma | Peter Dörr |
| 12:45-13:00 | Exploring Vendor-Neutral SMART on FHIR Infrastructure for Secure Data Exchange in Research and Patient Care | Katja Hoffmann, Eveline Prochaska, Markus Wolfien, Martin Sedlmayr |
| 13:00-14:00 | Lunch | |
| 14:00-14:25 | Enhancing GISMo: Integrating Recipe Contexts into a Graph-Based Ingredient Substitution Module | Julie Loesch, David Schimmel, Funda Erdem, Deryanur Kalkavan, Zeki Bilgin, Remzi Celebi |
| 14:25-14:40 | A multi-modal and temporal antibiotic resistance knowledge graph | Brieuc Quemeneur, Audrey Bihouée, Samuel Chaffron, Claudine Médigue, Hervé Ménager, Alban Gaignard |
| 14:40-14:55 | Trap of Time: Historical Common Names to Modern Taxonomy Mapping using LLMs | Jan Fillies, Naouel Karam, Alois Wieshuber, Giada Matheisen, Malte Rehbein, Belen Escobari, Sarah Fischer, Adrian Paschke |
| 14:55-16:00 | Poster / Demo session & Coffee | |
| 16:00-16:15 | RDF resources for biomedical research | Mayumi Kamada, Shuichi Kawashima, Toshiaki Katayama |
| 16:15-16:30 | GlyCosmos: An Integrated Semantic Knowledge Base for Glycoscience | Sunmyoung Lee, Yasunori Yamamoto, Achille Zappa, Kiyoko F. Aoki-Kinoshita |
| 16:30-17:30 | Open Source Ecosystem for Knowledge Graphs | Prof. Toshiaki Katayama |
| 17:30-18:30 | Semantic web and life sciences | Chair: Andrea Splendiani |
| DAY 4 – Thursday 27th February – Hackathon | ||
| 09:00-18:00 | Hackathon area | |